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Principal Investigator
Name
Erika Palmieri
Degrees
PhD
Institution
Cancer Innovation Laboratory, National Cancer Institute
Position Title
Staff Scientist
Email
About this CDAS Project
Study
PLCO (Learn more about this study)
Project ID
PLCO-1964
Initial CDAS Request Approval
Aug 12, 2025
Title
Polyamine Metabolism in Breast Cancer
Summary
Our central hypothesis is that cancer cells may contribute metabolites in the polyamine pathway to the tumor microenvironment, and that myeloid cells within this environment are equipped with genes for the metabolism and processing of these metabolites. We believe this metabolic interplay ultimately affects the myeloid cells' pro-tumor potential. We collected data on a mouse model of breast cancer and confirm biochemical mechanism in vitro and we are currently investigating the relationships between the expression of genes in the polyamine synthesis and metabolism and various clinical parameters, including patient survival outcomes, immune cell infiltration patterns, and response to different therapeutic interventions in breast cancer. Furthermore, we are particularly interested in identifying associations and correlations between two or three specific genes within this pathway set, and how these relationships might impact the aforementioned clinical endpoints.
We would therefore like to access to the metabolomics data from the published study: Chang VC, Rhee J, Berndt SI, et al. Serum perfluorooctane sulfonate and perfluorooctanoate and risk of postmenopausal breast cancer according to hormone receptor status: An analysis in the Prostate, Lung, Colorectal and Ovarian Cancer Screening Trial. Int J Cancer. 2023;153(4): 775‐782. doi:10.1002/ijc.34487
Given the sinificant power of the PLCO cohort, accessing the metabolomics data would be incredibly valuable for our research. This analysis could provide crucial insights and potentially lead to the identification of novel biomarkers.
Aims

• Detection of Polyamines and Acetylated Polyamines in the Cohort
As an initial goal, we aim to investigate whether polyamines and their acetylated derivatives are present and measured within this specific cohort. Establishing the presence or absence of both polyamines and their acetylated forms is an essential prerequisite for all subsequent quantitative and correlative analyses.
• Correlation of Polyamine Levels with Cancer Progression and Clinical Parameters
Beyond confirming presence, it is of particular interest to assess whether the levels of polyamines and acetylated polyamines show statistically significant relationships with cancer growth dynamics or other clinically relevant factors. This will involve performing rigorous data analyses to evaluate correlations between biomarker concentrations and variables such as tumor size, disease stage, progression, treatment response, and patient outcomes, as well as other metabolic or demographic parameters.
• Estimating Ratios to Infer Synthesis and Metabolic Activity
We are also interested in calculating the ratios of parent polyamines to their metabolic derivatives (such as acetylated or otherwise transformed forms). The primary objective here is to use these ratios as proxies for the relative rates of polyamine synthesis versus metabolism within the cohort. By establishing these metabolic indices, we can investigate whether variations in polyamine turnover are linked to the development, progression, or severity of disease or to other clinical or biochemical markers. Furthermore, the correlations between these calculated ratios and relevant clinical parameters will be explored to determine if such indices could serve as useful biomarkers for disease status, prognosis, or therapeutic response.
• Additional Analytical Considerations
Where possible, we plan to stratify data by patient subgroups (e.g., based on treatment regimens, age groups, or other relevant demographics) in order to further elucidate potential patterns or associations that could be masked in aggregate analyses. Results will be rigorously validated through appropriate statistical methods to ensure robustness and reproducibility of any observed relationships between polyamine biochemistry and clinical characteristics.

Collaborators

Benson, Gretchen, NCI, DCEG, gierachg@mail.nih.gov
Harris, Alexandra, NCI, DCEG, alexandra.harris2@nih.gov
Wink, David , NCI, CIL, wink@mail.nih.gov
Micheal Vitek, Duke Department of Neurology ,mikevitek@cognosci.com