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Phase II Trial of Weekly Erlotinib Dosing to Reduce Duodenal Polyp Burden Associated with Familial Adenomatous Polyposis

Over the course of this study 2,990 biospecimens were collected. Research blood kits were provided by BAP Kit Building (Biospecimen Accessioning and Processing Core Facility) and were used for collecting and shipping all research samples for analysis. Optional blood and urine specimens were collected at baseline, Month 3, and the end of the study (Month 6). The blood specimens were processed into serum, plasma, and buffy coat samples. Tissue endoscopic biopsies were collected at baseline and Month 6.

Utilizing the BAP kit, urine was collected into a dedicated urine container and then aliquoted to tubes. These tubes were then shipped to BAP on dry ice.

Blood samples were collected into a 10 mL no additive red-topped tube and a 10 mL purple topped tube or just 2 10 mL purple topped tubes. The red-top tube was processed into serum while the purple-topped tube was processed into plasma and buffy coat specimens. These specimens were then shipped to BAP on dry ice.

Different number of tissue samples were taken depending on the Spigelman score. At baseline, at least one polyp will be removed and used for eligibility and Spigelman stage determination. If Spigelman 2, 4 biopsies of normal duodenal mucosa and 1 biopsy of duodenal polyp will be taken. If Spigelman 3, 4 biopsies of normal duodenal mucosa and 2 biopsies of duodenal polyps will be taken. If rectal stump or intact rectum then just 4 biopsies of normal rectal mucosa will be taken. One rectal mucosa and if applicable one polyp will be placed int RNA later and refrigerated at 4-6°C or snap frozen. The rest of the samples will be placed in separate cryovials and snap frozen in liquid nitrogen before being shipped to BAP.

Number of Biospecimen Vials/Slides Collected Per Person
Material Baseline Month 3 Month 6
Serum (10 mL)1 0, 1 0, 1 0, 1
Plasma (10 mL)1 1, 2 1, 2 1, 2
Buffy (10 mL)1 1, 2 1, 2 1, 2
Tissue (Biopsies)2 4, 5, 6 4, 5, 6
Urine 1 1 1

  1. Participants could either have serum and plasma/buffy coat or could have 2 samples of plasma and buffy coat
  2. Depending on Spigelman score, participants could have different numbers of biopsies. All participants had 4 duodenal mucosa biopsies. If they had a Spigelman 2 score then they had a duodenal polyp biopsy. If they had a Spigelman 3 score then they had 2 duodenal polyp biopsies.