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Pilot Study of EGFR Inhibition with Erlotinib in Cirrhosis to Inhibit Fibrogenesis and Prevent Hepatocellular Carcinoma

Biospecimen Report

Research Blood Specimens

Research blood will be drawn at baseline and after the final dose of erlotinib immediately prior to surgery. It will be processed according to the instructions in the blood specimen kit provided by BAP (Biospecimen Accessioning and Processing Core Facility). Specimens will be processed (centrifuged, aliquoted, labeled per instructions in research blood kit), packaged, and shipped to BAP for accessioning and storage (See Section 10.1). Upon request, they will be shipped in batches for analyses.

Research Tissue Specimens

Surgical Cohort - Pre-Intervention

The pre-intervention percutaneous or transjugular liver biopsy may be conducted under ultrasound guidance following institutional standards of care before, during, and after the procedures. The collected specimens will consist of 4 specimens, of which 2 will be placed in RNAlater (Qiagen), and the other two will be placed in formalin. All four samples will be clearly labeled with study number, participant ID, specimen type, and date and time of collection. The RNAlater samples will be stored in a refrigerator at the participating site until shipped to the BAP Lab. The BAP Lab will store samples in a -80°C freezer until sent to the lab.

The formalin samples will be embedded in paraffin within 24 hours. The date and time of collection as well as paraffin embedding will be recorded on the Specimen Submission: Tissue case report form. Paraffin blocks will be shipped on a cool pack to the Mayo Clinic (CPN PC Office) for accessioning. The PC office will forward blocks and cores to the Mayo Clinic PRC in one batch at the end of enrollment for each cohort.

Surgical Cohort - Post-Intervention

After the liver resection surgery, a portion of the liver specimen that does not contain tumor (≥ 1 cm from negative margin) and consists of at least 1 gram of liver tissue will be placed in RNAlater (Qiagen). One other section of non-tumor bearing liver tissue measuring at least 1 cm x 1 cm x 0.5 cm will be placed in formalin, clearly labeled, and stored in the refrigerator until shipment. The formalin samples will be embedded in paraffin within 24 hours.

Paraffin blocks will be shipped refrigerated to Mayo Clinic (CPN PC Office) for accessioning and then forwarded to the Mayo Clinic PRC in one batch at the end of enrollment for each cohort.

If an institution cannot provide blocks, one 3 mm to 4 mm core should be taken from each block and placed into individual 2 mL tubes. Alternatively, sites may submit ten 5-micron slides plus one H&E.

Notes:

  • Analysis for the study endpoints requires all slides for both time points for all participants to be sectioned at the same time.
Non-Surgical Cohort - Pre-Intervention

After informed consent and pre-registration, specimens from the clinical biopsy (paraffin block or ten []) 5-micron unstained slides and 1 H&E) will be obtained and submitted to the CPN Pathology Coordinator for accessioning. The pathology coordinator will ship immediately to Mayo Clinic PRC for real-time (≤ 21 days from collection) phospho-EGFR assessment to determine eligibility. At this time, one or two slides will be cut from the block for the purposes of determining eligibility. The rest of the block will remain intact and be cut at the time of dose-level efficacy analyses (post-intervention). Results will be returned to CPN PC for entry into the database. If the assessment of the pre-intervention specimen is positive, the participant will be allowed to continue the screening process.

Non-Surgical Cohort - Post-Intervention

The post-intervention percutaneous or transjugular liver biopsy may be conducted following institutional standards of care before, during, and after the procedures. The collected specimens will consist of 4 samples. Two will be placed in RNAlater (Qiagen), and the other two will be placed in formalin. All specimens will be clearly labeled with study number, participant ID, specimen type, and date and time of collection. The RNAlater samples will be stored in a refrigerator at the participating sites until shipped to the BAP Lab. The BAP Lab will store samples in a -80°C freezer until sent to the lab (upon request).

The fresh formalin samples will be embedded in paraffin within 24 hours. The date and time of collection as well as paraffin embedding will be recorded on the Specimen Submission: Tissue case report form. Paraffin blocks will be shipped refrigerated to the Mayo Clinic (CPN PC Office) for accessioning.

At the same time, the paraffin block containing the specimen used to establish initial eligibility at baseline will be submitted to the CPN PC Office. Additional sections are required because it is critical that specimens used for efficacy analysis at the end of each dose level be cut for both time points and for all participants at the same time.

Institutions unable to submit paraffin blocks may submit one 3.0mm to 4.0mm core taken from each block and placed into individual 2mL tubes. If cores cannot be provided, cut one H&E and 10 sections at 5 microns and mount on charged slides.

Number of Biospecimen Vials/Slides Collected Per Person
Material (Surgical Cohort) Screen 1 Screen 2 Post Intervention Evaluation
Serum 1 1
Plasma 1 1
WBC 1 1
Tissue 1 1
Material (Non-Surgical Cohort) Screen 1 Screen 2 Post Intervention Evaluation
Serum 1 1
Plasma 1 1
WBC 1 1
Tissue 1 1